Pharmaceutical Technology - April 2023

Pharmaceutical Technology- April 2023

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PharmTech.com The Real Message Behind Commercial mRNA Products April eBook 2023 Pharmaceutical Technology ® 39 AnAly tics mass spectrometers provide high sensitivity with high resolution, the latter feature rising in importance as the complexity and heterogeneity of materials under exam- ination become more acute. The implementation of mul- tiple fragmentation functions (e.g., collision-induced dissociation, higher energy collisional dissociation, electron-transfer dissociation, ultraviolet photodisso- ciation) on the orbitrap-based mass spectrometers also enables researchers to tackle a wide range of challeng- ing applications. Conclusion The use of MS in the study of oligonucleotides has be- come almost as significant as applications in the pep- tide/protein area despite the historical impact of tech- niques such as PCR. It is highly likely that novel RNA structures are yet to be discovered, leading to greater understanding of the function and role of this molecular type and potentially the development of more effective therapeutic agents. As with protein chemistry, high- er-order structure governs the function of many RNA species. It is likely that MS will play an important role in defining these large RNA structures that currently remain unresolved (18). Mass spectrometric techniques are just beginning to provide insights in some critical therapeutic areas where, for example, the quantitative identification of RNA modifications (genetic and epi- genic) appears to provide a source of potential biomark- ers and treatment monitoring in areas such as oncology (19). MS has also become important in the development and understanding of therapeutic products themselves as illustrated by the work of Packer et al. (20), who used LC–MS/MS to study mRNA modifications as a result of reaction with certain lipids used in lipid nanoparti- cle-vector vaccines. References 1. Crick, F.H. On Protein Synthesis. Symp Soc Exp Biol 1958, 12, 138–163. 2. Zamecnik, P.C.; Stephenson, M.L. Inhibition of Rous Sar- coma Virus Replication and Cell Transformation by a Spe- cific Oligodeoxynucleotide. Proc Natl Acad Sci USA 1978, 75, 280–284. 3. Zogg, H.; Singh, R.; Ro, S. Current Advances in RNA Thera- peutics for Human Diseases. Int J Mol Sci. 2022, 23 (5), 2736. DOI: 10.3390/ijms23052736 4. Liu, K.S.; Pan, F.; Mao, X.D.; Liu, C.; Chen, Y.J. Biological Functions of Circular RNAs and Their Roles in Occurrence of Reproduction and Gynecological Diseases. Am J Transl Res. 2019, 11 (1),1–15. 5. Morris, H.R.; Dell, A.; McDowell, R.A. Extended Perfor- mance Using a High-Field Magnet Mass-Spectrometer. Biomedical Mass Spectrometry 1981, 8, 463–473. 6. Morris, H.R.; Panico, M.; Taylor, G.W. Mapping of Re- combinant DNA Protein Products. Biochem. Biophys. Res. Commun. 1983, 117, 299–305. 7. McLuckey, S.A.; Van Berkel, G.J.; Glish, G.L. Tandem Mass Spectrometr y of Small, Multiply Charged Oligo- nucleotides. J Am Soc Mass Spectrom. 1992, 3 (1), 60–70. 8. Taucher M.; Breuker, K. Characterization of Modified RNA by Top-Down Mass Spectrometry. Angew Chem Int Ed Engl. 2012, 51 (45), 11289–11292. 9. Vanhinsbergh C.J.; Criscuolo, A.; Sutton, J.N.; et al. Char- acterization and Sequence Mapping of Large RNA and m RNA Therapeutics Using Mass Spectrometr y. Anal Chem. 2022, 94 (20),7339–7349. DOI: 10.1021/acs.anal- chem.2c00765 10. Heiss, M.; Hagelskamp, F.; Marchand, V.; Motorin, Y.; Kellner, S. Cell Culture NAIL-MS Allows Insight into Human tRNA and rRNA Modification Dynamics In Vivo. Nat Commun. 2021, 12 (1), 389. DOI: 10.1038/s41467-020- 20576-4 11. Khristenko, N.; Amato, J.; Livet, S.; et al. Native Ion Mo- bilit y Mass Spectrometr y: When Gas-Phase Ion Struc- tures Depend on the Electrospray Charging Process. J Am Soc Mass Spectrom. 2019, 30, 1069–1081. 12. Ha l loy, F.; Biscans, A.; Bujold, K.E.; et a l. Innovative De velopment s a nd E merg i ng Tec h nolog ies i n R NA T herapeut ics. R NA Biol . 2022, 19 (1), 313–332 . D OI: 10.1080/15476286.2022.2027150 13. Honor, A.; Rudnick, S.R.; Bonkovsky, H.L. Givosiran to Treat Acute Porphyria. Drugs Today (Barc). 2021, 57 (1), 47–59. DOI: 10.1358/dot.2021.57.1.3230207 14. Hawner, M.; Ducho, C. Cellular Targeting of Oligonucle- otides by Conjugation with Small Molecules. Molecules. 2020, 25 (24), 5963. DOI: 10.3390/molecules25245963 15. Santos, I.C.; Brodbelt, J.S. Recent Developments in the Characterization of Nucleic Acids by Liquid Chromatog- raphy, Capillary Electrophoresis, Ion Mobility, and Mass Spectrometry (2010-2020). J Sep Sci. 2021, 44 (1), 340–372. DOI: 10.1002/jssc.202000833 16. Koshel, B.; Birdsall, R.; Chen W. Two-Dimensional Liq- uid Chromatography Coupled to Mass Spectrometry for Impurity Analysis of Dye-Conjugated Oligonucleotides. J Chromatogr B Analyt Technol Biomed Life Sci. 2020 Jan 15, 1137:121906. DOI: 10.1016/j.jchromb.2019.121906 17. Goyon, A.; Scott, B.; Kurita, K.; et al. On-line Sequencing of CRISPR Guide RNAs and Their Impurities via the Use of Immobilized Ribonuclease Cartridges Attached to a 2D/3D-LC-MS System. Anal Chem. 2022, 94 (2),1169–1177. DOI: 10.1021/acs.analchem.1c04350 18. Amalric, A.; Bastide, A.; Attina, A.;et al. Quantif ying R NA Mod i f icat ions by Ma ss Spec t romet r y: A Novel Source of Biomarkers in Oncology. Crit Rev Clin Lab Sci. 2022, 59 (1), 1–18. DOI: 10.1080/10408363.2021.1958743 19. Christy, T.W.; Giannetti, C.A.; Houlihan, G.; et al. Direct Mapping of Higher-Order RNA Interactions by SHAPE- JuMP. Biochemistry. 2021, 60 (25),1971–1982. DOI: 10.1021/ acs.biochem.1c00270 20. Packer, M.; Gyawali, D.; Yerabolu, R.; et al. A Novel Mech- anism for the Loss of mRNA Activity in Lipid Nanoparti- cle Delivery Systems. Nat Commun 2021, 12, 6777. ■

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